The institution is governed by the following Board of Directors;
| Founding President | Rev. Dr. Viji. S. Sam |
| Vice-President | Rev. K.U. Pothen |
| Secretary | Rev. Roy M. Manuel |
| Treasurer | Mrs. Bincy Viji Sam |
| Member | Mr.Bickson Viji Sam |
Administrative Board of Peniel Counselling Centre
| Director | Rev. Dr. Viji. S. Sam |
| Administrator | Mrs. Bincy Viji Sam |
| Patron | Rev. P.M. Johnson |
| Academic Dean | Rev. K.S. Samuel |
| Faculty Member | Rev. Dr. Cherian Mathew |
| Members | Mr. Somi Mathew |
| Rev. Samuel Mathew | |
| Mrs. Jincy Sam |
Administrative Board of Peniel Bible School
| Principal | Rev. Dr. Viji. S. Sam |
| Dean | Rev. Saji George |
| Registrar | Rev. Daniel Yohannan |
| Office Secretary | Mrs. Bincy Viji Sam |
| Members | Rev. Dr. P. Sunny |
| Rev. Babu S. Sam | |
| Mr. Roy K.A | |
| Mrs. Jincy Sam |
